dsCheck

dsCheck — sensitive off-target search website for dsRNA-mediated RNAi [help]
dsRNA Design page / dsRNA Verification page

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>sample sequence (Drosophila pou2; NM_078834.2, CDS)
atgatggtgctacagcaacaacaacaacagcgtctctgggatgcaacaacaacgagcaacacaaatacacaaacacagcaatcggcgaatgtggaaagcacgccaacaaaagtttgccatcaggaaaatgcagcgacacacacatttatgcggcacatgtcgaactcaccaacaccgccctcgccactgcgttcgctatcagactgcggaaagagcttcgaggaggaggaactggagctgggcgagaactgcgagatgccacagaatctgagcagcaagcgccaggccagggaactagactctgagctggaaaacgaggtcctggatctggcaccgccaccgaagagattggccgaggagcaagaggaggaaaaggtggccagtgtcaatccaccacagcccgtggcatttgcaccggaggaaatgcatcaggctctgcaactgcagttgcacagctacatcgaaatggttcgccaattggcgccggaggcgtttcccaatcccaacctggccacgcagttcctgctgcagaactcactgcaagccttagcgcagtttcaggccctgcaacagatgaagcagcagcaaagggaggatcctctgcccagttactccacccccttggccaaatcaccactgagaagtccatccctgagtccggtgccccggcacagcaaatcccagcagcgaactccgccaaactcgatgactgccaattctctgggaatgagtagtgccgtgatgactccaaatacgcccagcatgcagcagcagccgcaactgcagcagagcactcccaagcccacgagtggactaactgtggcatctgccatggccaagctggaacaatcgccggaagagaccaccgatctggaggaactggaacagttcgccaagaccttcaaacagcggcgaatcaagctgggcttcacccagggcgatgtgggtctggccatgggcaaactgtatggcaatgacttctcgcagaccaccatttcccgcttcgaagccctcaatctgagcttcaagaacatgtgcaagctgaagccgctgctccagaaatggctggaggatgcggacagcacggtggccaagtcgggcggtggagtgttcaacatcaacacgatgaccagcacgctgagcagcacaccggaaagcatcctgggacgcagacgcaagaagcgcacctccatcgagaccacggtgcgcaccacgctggagaaggccttcctgatgaactgcaagcccacgtcggaggagattagccagctgtccgagcgcttgaacatggacaaggaggtgatccgggtgtggttctgcaatcgccgtcagaaggagaagcgcatcaatccctcgctggatctggacagtcccacgggcactccgctgagcagtcatgcctttgggtatccaccgcaggctctgaacatgtcccacatgcaaatggagggcggttcgggttccttctgcggcagttccatcagttcaggggaatag

[help]

Reference:
Naito,Y.*, Yamada,T.*, Matsumiya,T., Ui-Tei,K., Saigo,K. and Morishita,S. (2005)
dsCheck: highly sensitive off-target search software for dsRNA-mediated RNA interference. Nucleic Acids Res. in press.
* Joint First Authors.